PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_009101805.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
Family C2H2
Protein Properties Length: 185aa    MW: 20399.1 Da    PI: 8.6018
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_009101805.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.80.00156991123
                    EEETTTTEEESSHHHHHHHHHHT CS
         zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                    ykC+ C+k+F +   L  H  +H
  XP_009101805.1 69 YKCGVCDKVFLSYQALGGHKASH 91
                    9*********8887777777666 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF139122.1E-116892IPR007087Zinc finger, C2H2
SuperFamilySSF576675.88E-968133No hitNo description
SMARTSM003550.0896991IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.396996IPR007087Zinc finger, C2H2
PROSITE patternPS0002807191IPR007087Zinc finger, C2H2
SMARTSM003550.35111133IPR015880Zinc finger, C2H2-like
PfamPF139126.5E-12111135IPR007087Zinc finger, C2H2
PROSITE profilePS501579.432111138IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009409Biological Processresponse to cold
GO:0010200Biological Processresponse to chitin
GO:0042538Biological Processhyperosmotic salinity response
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MALEALNSPR IASPVPTLFE EHWTKGKRSK RSRSDHLHRL SEEEYLAFCL MLLARDGDRH  60
HVEEEKTVYK CGVCDKVFLS YQALGGHKAS HRNLSSGGDV KPTTPSAVKS HVCSICHKSF  120
ATGQALGGHK RCHYDGSSSV VSNYEGVGST SHVSRGLDLN ITPINEFSPD DEVMSPLPSK  180
KLRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Bra.273480.0root
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1894130.0AC189413.1 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB061E18, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009101805.11e-136PREDICTED: zinc finger protein AZF3
SwissprotQ962892e-76ZAT10_ARATH; Zinc finger protein ZAT10
SwissprotQ9SSW07e-77AZF3_ARATH; Zinc finger protein AZF3
TrEMBLM4EXX71e-136M4EXX7_BRARP; Uncharacterized protein
STRINGBra033666.1-P1e-135(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12112898
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43170.14e-78zinc-finger protein 3